Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70734491_70755686_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70734491 - 70755686

Intron Length:

21196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

GTAACTTCAAAA

Flanking Amino Acid:

QHNMVSGIYSSQRSLAEITE

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

71.6

0.54

33.1

Major PPT

87.1

0.83

0.8

84.6

30.3

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

49.5

-0

1.7

59.88

39.2

Associated Gene:

Gene:

PDSS2

Ensembl Gene ID:

ENSAPLG00000009546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046662

70691862 - 70796039

104178

ENSAPLT00000009949

70692739 - 70795245

102507