About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7074385_7075543_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7074385 - 7075543
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGGATG
5'SS Class:
major
3'SS Sequence:
ATTCTTTACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CATTCTTTACTC
Flanking Amino Acid:
WEDRWEWLRLILEVHQFSRD
Intron Amino Acid Position:
1736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
67.1
44
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
78.7
0.65
0.9
77.7
35
Minor 5ss
37.1
-1.5
3.3
45.2
43.7
Minor BPS
60.7
0.32
1.6
66.7
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691