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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70770216_70779261_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70770216 - 70779261
Intron Length:
9046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTCATTT
Flanking Amino Acid:
IYYENSKSSEENCLTDDIGI
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.9
0.7
85.3
28
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
50.2
0.08
1.8
70.88
41.3

Associated Gene:

Gene:
PDSS2
Ensembl Gene ID:
ENSAPLG00000009546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046662
70691862 - 70796039
104178