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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7077541_7079648_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7077541 - 7079648
Intron Length:
2108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AAACACATGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTCATTTATCT
Flanking Amino Acid:
EHDIQALGTQVRQLQEDAAR
Intron Amino Acid Position:
1580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
50.9
0.02
1.1
40.9
42.6
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
56.4
0.28
1.8
76.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691