Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70779436_70781122_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70779436 - 70781122

Intron Length:

1687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACACCTT

5'SS Class:

major

3'SS Sequence:

TCTTCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACACAA

U12 Branch Point Sequence:

GTTTCTGGAAAC

Flanking Amino Acid:

YGKHMSMSHKLHSDLQPFVK

Intron Amino Acid Position:

244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.1

66.2

45.1

Major BPS

51.9

0.05

0.9

27.3

Major PPT

90.3

0.91

0.6

88.5

21.1

Minor 5ss

42.1

-0.9

3.5

46.3

Minor BPS

47.8

-0.1

2.2

65.31

Associated Gene:

Gene:

PDSS2

Ensembl Gene ID:

ENSAPLG00000009546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046662

70691862 - 70796039

104178

ENSAPLT00000009949

70692739 - 70795245

102507