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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70781255_70786385_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70781255 - 70786385
Intron Length:
5131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTCTCTTCAAG
Flanking Amino Acid:
RDAWIKQIREAQGKGNIMDY
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
77.1
0.61
1
75.5
33.4
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
52.7
-0
2
65.72
41.9

Associated Gene:

Gene:
PDSS2
Ensembl Gene ID:
ENSAPLG00000009546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046662
70691862 - 70796039
104178
ENSAPLT00000009949
70692739 - 70795245
102507