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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7080379_7081784_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7080379 - 7081784
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAACT
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
GAGGACTTGATG
Flanking Amino Acid:
RTLVADNHPESERISMRQSK
Intron Amino Acid Position:
1386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.7
36.1
Major BPS
75
0.62
1
65.3
41.5
Major PPT
93.5
0.98
0.7
92.3
26.6
Minor 5ss
42.3
-0.9
2.8
59.4
44.8
Minor BPS
46.3
-0.4
1.7
44.67
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691