Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70824424_70841606_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

70824424 - 70841606

Intron Length:

17183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGTGATAT

5'SS Class:

major

3'SS Sequence:

GTTAAAATGGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

ATTTGTTAAAAT

Flanking Amino Acid:

DERCRRPNRKKSVIYCIIII

Intron Amino Acid Position:

820

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

69.2

30.8

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

58.8

0.2

1.2

52.2

45.7

Minor 5ss

-0.9

3.1

55.6

43.3

Minor BPS

49.9

0.07

2.1

75.14

41.9

Associated Gene:

Gene:

BEND3

Ensembl Gene ID:

ENSAPLG00000009545

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009933

70816440 - 70841796

25357