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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70827922_70830994_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70827922 - 70830994
Intron Length:
3073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCCAAA
5'SS Class:
major
3'SS Sequence:
ACTTCTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTTATCTTACTT
Flanking Amino Acid:
VILRRWKNLKLFPSQKN*
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.2
61.3
41
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
78.9
0.65
0.9
72.2
37.3
Minor 5ss
37.7
-1.4
3.1
48.2
47.5
Minor BPS
66.7
0.6
1.6
83.96
37.3

Associated Gene:

Gene:
MTRES1
Ensembl Gene ID:
ENSAPLG00000009523
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037937
70827406 - 70833502
6097