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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70833511_70833888_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70833511 - 70833888
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGTCTT
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
PGSWPRAEERGYAMTGFRLP
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
68.8
43.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
32.9
-2
3.3
40.9
45.4
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
MTRES1
Ensembl Gene ID:
ENSAPLG00000009523
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009927
70830778 - 70833964
3187