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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7083389_7083684_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7083389 - 7083684
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TGTCTCATAAGT
Flanking Amino Acid:
TVQLLIKKNQTLQKEIQGHQ
Intron Amino Acid Position:
1250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
77
0.61
0.9
77.9
30.9
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
52.7
0.16
1.9
74.99
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691