Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7083775_7083978_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7083775 - 7083978

Intron Length:

204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCAAAT

U12 Branch Point Sequence:

TTGCTCCAAATC

Flanking Amino Acid:

QFNRDVEDEILWVGERMPIA

Intron Amino Acid Position:

1220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

71.5

33.2

Major BPS

64.7

0.37

1.1

69.5

34.1

Major PPT

95.8

1.03

0.5

92.1

18.3

Minor 5ss

33.1

-1.9

2.7

40.7

39.2

Minor BPS

46.6

-0.2

1.9

59.73

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007461

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007827

7062426 - 7107116

44691