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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7084204_7084896_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7084204 - 7084896
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TACTTCTCAAGT
Flanking Amino Acid:
SVNILLKKQQMLENQMDVRK
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.7
0.56
1
73.5
41.9
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
55.5
0.25
1.9
72.77
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691