Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7085161_7086728_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7085161 - 7086728

Intron Length:

1568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAG

U12 Branch Point Sequence:

TGTTCTTTGCTT

Flanking Amino Acid:

NKEWLEKIEKEGMQLIAEKP

Intron Amino Acid Position:

1057

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

1.1

83.2

30.8

Major BPS

54.8

0.12

1.6

53.3

44.2

Major PPT

86.2

0.81

0.8

80.4

31.5

Minor 5ss

40.6

-1.1

2.6

50.9

45.5

Minor BPS

-0.1

3.4

79.17

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007461

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007827

7062426 - 7107116

44691