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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7086876_7091061_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7086876 - 7091061
Intron Length:
4186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
ATGTCCTGAACA
Flanking Amino Acid:
LQKFLQDCQELSLWINEKML
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
88.4
0.86
0.7
80.6
31.4
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
74.3
0.76
1.4
79.06
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691