About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7091153_7097852_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7091153 - 7097852
Intron Length:
6700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTTTTTGACT
Flanking Amino Acid:
IQEKVDSIDDRHRKNREAAS
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.8
0.63
0.9
74.6
40
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
77.4
0.94
1
88.54
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691