About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70925991_70927242_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70925991 - 70927242
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TACTTTTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TACTTTTTACCA
Flanking Amino Acid:
VRFIASLVCILLELSEIPCW
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.6
0.67
0.9
73.9
40.1
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
59.6
0.3
1.6
67.28
39.8

Associated Gene:

Gene:
QRSL1
Ensembl Gene ID:
ENSAPLG00000009374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039969
70925776 - 70948199
22424