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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70925991_70936213_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70925991 - 70936213
Intron Length:
10223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TACTTTTTACCA
Flanking Amino Acid:
DILTQAANMAVLELSEIPCW
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.6
0.67
0.9
73.9
40.1
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
59.6
0.3
1.6
67.28
39.8

Associated Gene:

Gene:
QRSL1
Ensembl Gene ID:
ENSAPLG00000009374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026110
70925776 - 70948199
22424