About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70927321_70936213_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70927321 - 70936213
Intron Length:
8893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACATTTTTAAAT
Flanking Amino Acid:
DILTQAANMAVFSQLITGGE
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.7
81.2
30.1
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
63
0.49
1.3
71.8
39.2

Associated Gene:

Gene:
QRSL1
Ensembl Gene ID:
ENSAPLG00000009374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039969
70925776 - 70948199
22424