About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70936420_70938717_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70936420 - 70938717
Intron Length:
2298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ACATCTGTATTT
Flanking Amino Acid:
ILSGNYFLLKQNYEDYFVKA
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
45.8
-0.2
2.1
62.32
42.6

Associated Gene:

Gene:
QRSL1
Ensembl Gene ID:
ENSAPLG00000009374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040074
70935065 - 70948199
13135
ENSAPLT00000039969
70925776 - 70948199
22424
ENSAPLT00000026110
70925776 - 70948199
22424
ENSAPLT00000009793
70935065 - 70948199
13135