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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70940579_70940681_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70940579 - 70940681
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTATTG
5'SS Class:
major
3'SS Sequence:
TGTCATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATG
Flanking Amino Acid:
RCVDDAAVVLGSLAGHDPKD
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
67
39
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.9
74.2
39.9
Minor 5ss
47.7
-0.2
2.8
64.9
46.4
Minor BPS
53.3
-0
1.8
61.75
41.5

Associated Gene:

Gene:
QRSL1
Ensembl Gene ID:
ENSAPLG00000009374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040074
70935065 - 70948199
13135
ENSAPLT00000039969
70925776 - 70948199
22424
ENSAPLT00000026110
70925776 - 70948199
22424
ENSAPLT00000009793
70935065 - 70948199
13135