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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70946392_70947620_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70946392 - 70947620
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGCATTAATT
Flanking Amino Acid:
AEESEERYRRGQPLGVLDGI
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.3
0.53
1
67.5
37.4
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
72.1
0.77
1.7
89.07
35.8

Associated Gene:

Gene:
QRSL1
Ensembl Gene ID:
ENSAPLG00000009374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039969
70925776 - 70948199
22424
ENSAPLT00000026110
70925776 - 70948199
22424
ENSAPLT00000009793
70935065 - 70948199
13135
ENSAPLT00000040074
70935065 - 70948199
13135