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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70948346_70949689_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70948346 - 70949689
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TAATGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTACTGAATT
Flanking Amino Acid:
SLNPIDLSMRSGYGATALNM
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.2
0.59
0.9
74
41.1
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
61.5
0.44
1.6
76.43
40.1

Associated Gene:

Gene:
RTN4IP1
Ensembl Gene ID:
ENSAPLG00000009151
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009544
70947922 - 70968041
20120