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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70950245_70950508_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70950245 - 70950508
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
GATTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGATTTTATTT
Flanking Amino Acid:
SEFVVASANEVSFKPKCLSH
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.5
0.71
0.9
78.3
39.6
Minor 5ss
40.8
-1
3.2
55.8
48.4
Minor BPS
55
0.23
1.6
71.47
40.5

Associated Gene:

Gene:
RTN4IP1
Ensembl Gene ID:
ENSAPLG00000009151
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009544
70947922 - 70968041
20120