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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70955268_70956786_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70955268 - 70956786
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGAG
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TACTTTTCACCC
Flanking Amino Acid:
SGGVGTFAVQLVKAWGAHVT
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.9
37.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.4
0.8
0.7
84.5
30.4
Minor 5ss
29.8
-2.3
3.3
38.1
46.8
Minor BPS
48.2
-0.1
1.8
58.7
40.8

Associated Gene:

Gene:
RTN4IP1
Ensembl Gene ID:
ENSAPLG00000009151
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009544
70947922 - 70968041
20120