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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70960586_70967278_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70960586 - 70967278
Intron Length:
6693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCCTAATG
Flanking Amino Acid:
EIAELVDSGKIQPVIDQVFP
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.8
74.1
30.7
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
61.8
0.23
1.7
68.6
39

Associated Gene:

Gene:
RTN4IP1
Ensembl Gene ID:
ENSAPLG00000009151
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009544
70947922 - 70968041
20120