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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70979533_70983049_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70979533 - 70983049
Intron Length:
3517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTTTTTACAG
Flanking Amino Acid:
VLKSLRIINTELSEPCIALF
Intron Amino Acid Position:
1525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
91.6
0.93
0.6
86.9
23.9
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
51
-0.1
1.8
59.29
43.1

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045488
70969503 - 71064819
95317
ENSAPLT00000042117
70969503 - 71067357
97855
ENSAPLT00000033405
70969503 - 71055777
86275
ENSAPLT00000008950
70969503 - 71015949
46447