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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70983180_70983441_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70983180 - 70983441
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCTTTGTTAAAA
Flanking Amino Acid:
AVKSSKVLGGSCIVFDQEEF
Intron Amino Acid Position:
1481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
50.9
0.02
2.1
64.65
41.8

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042117
70969503 - 71067357
97855
ENSAPLT00000033405
70969503 - 71055777
86275
ENSAPLT00000008950
70969503 - 71015949
46447
ENSAPLT00000045488
70969503 - 71064819
95317