About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70991960_70992068_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70991960 - 70992068
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTGAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTGAACA
Flanking Amino Acid:
ELQSLRPVVGDFTSSHMIMY
Intron Amino Acid Position:
1343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
66.7
40.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
82.6
0.73
0.9
81
35.4
Minor 5ss
42.4
-0.8
2.7
49.6
39.8
Minor BPS
74.5
0.77
1.3
83.67
29.9

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042117
70969503 - 71067357
97855
ENSAPLT00000033405
70969503 - 71055777
86275
ENSAPLT00000008950
70969503 - 71015949
46447
ENSAPLT00000045488
70969503 - 71064819
95317