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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70992196_70992930_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70992196 - 70992930
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTTGTTATTT
Flanking Amino Acid:
SVGSMKVLGGIWVAYEKPGF
Intron Amino Acid Position:
1300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
41.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.7
0.58
0.9
74.3
40.6
Minor 5ss
34.5
-1.8
3.3
44.8
43.4
Minor BPS
47
-0.1
2.2
66.34
45.4

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045488
70969503 - 71064819
95317
ENSAPLT00000042117
70969503 - 71067357
97855
ENSAPLT00000033405
70969503 - 71055777
86275
ENSAPLT00000008950
70969503 - 71015949
46447