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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70999222_71001499_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70999222 - 71001499
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATATTTGTGACT
Flanking Amino Acid:
NVPTGLLDVDTLSRNGQSKI
Intron Amino Acid Position:
1045

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
66.3
0.37
1
65.8
41
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
51
0.11
2
72.95
38.3

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008950
70969503 - 71015949
46447
ENSAPLT00000045488
70969503 - 71064819
95317
ENSAPLT00000042117
70969503 - 71067357
97855
ENSAPLT00000033405
70969503 - 71055777
86275