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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7099922_7100049_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7099922 - 7100049
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCTTTGTGATCT
Flanking Amino Acid:
KLEDLEVIQHRFESLEPEMN
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.5
40.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
30.2
-2.3
3.2
39
46.4
Minor BPS
44
-0.3
2.3
63.57
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691