About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71003223_71008725_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71003223 - 71008725
Intron Length:
5503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTGCTTCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AAAGATATAACT
Flanking Amino Acid:
ASKVVTTKISLPAKPKNVEL
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.6
0.64
0.8
74.2
31
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
46.7
-0.1
1.8
62.64
40.8

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045488
70969503 - 71064819
95317
ENSAPLT00000042117
70969503 - 71067357
97855
ENSAPLT00000033405
70969503 - 71055777
86275
ENSAPLT00000008950
70969503 - 71015949
46447