Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7100921_7101608_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7100921 - 7101608

Intron Length:

688

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTAGC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCTGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TCTGTCTGAACA

Flanking Amino Acid:

SAQKFATDGEGYKPCDPQVI

Intron Amino Acid Position:

321

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.1

76.2

39.9

Major BPS

84.4

0.85

1.1

34.5

Major PPT

69.4

0.44

65.5

39.9

Minor 5ss

41.6

-0.9

2.6

54.9

42.2

Minor BPS

0.4

1.6

71.44

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007461

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007827

7062426 - 7107116

44691