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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71010216_71015946_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71010216 - 71015946
Intron Length:
5731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TTGGCATTAACC
Flanking Amino Acid:
MSTSQFPDCSR
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.3
43.7
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
88.1
0.86
0.7
84.2
30.9
Minor 5ss
30.3
-2.3
3.2
35.6
43
Minor BPS
66.2
0.49
1.7
75.47
41

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008950
70969503 - 71015949
46447