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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7102828_7103505_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7102828 - 7103505
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGCTT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTGTCTTTACA
Flanking Amino Acid:
LSENQRLVSQDNFGFDLPAV
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
62.5
43.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
30.2
-2.3
3.6
47.4
48
Minor BPS
60.1
0.31
1.8
70.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691