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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71030820_71067014_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
71030820 - 71067014
Intron Length:
36195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CATGTATTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.1
0.7
0.8
77.5
30.5
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
54.3
0.21
1.7
69.42
42

Associated Gene:

Gene:
CRYBG1
Ensembl Gene ID:
ENSAPLG00000008606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042117
70969503 - 71067357
97855