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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7105230_7106265_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7105230 - 7106265
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATTTTA
5'SS Class:
major
3'SS Sequence:
AAATTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTATTGTAACT
Flanking Amino Acid:
NTYRTVEKPPKFTEKGNLEV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
79.7
29.1
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
68.4
0.42
1
66.8
44
Minor 5ss
45.6
-0.5
2.8
58.5
40.3
Minor BPS
60.4
0.4
2
83.78
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691