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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71076694_71077154_F

Intron Information:

Intron Rank:
124439
Intron Class:
major
Intron Phase:
Intron Coordinates:
71076694 - 71077154
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017085
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032526
71075919 - 71077886
1968