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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71080062_71080137_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71080062 - 71080137
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGACGG
5'SS Class:
major
3'SS Sequence:
CATGGGGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTTCTCTCCATG
Flanking Amino Acid:
MQTRVKGFQLRKRRGST
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
53.4
45.5
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
62.7
0.29
1.1
52.8
45.7
Minor 5ss
25.5
-2.8
2.8
22.2
36.9
Minor BPS
47.7
-0.3
2
60.48
41.9

Associated Gene:

Gene:
ATG5
Ensembl Gene ID:
ENSAPLG00000017968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014444
71079243 - 71142353
63111