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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71080300_71086157_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71080300 - 71086157
Intron Length:
5858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTATACTTAAAG
Flanking Amino Acid:
ITEREAEPYYLLLPRISYLT
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.6
28.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
33.2
-1.9
3.4
44.6
43.6
Minor BPS
60.1
0.18
1.7
64.07
42.7

Associated Gene:

Gene:
ATG5
Ensembl Gene ID:
ENSAPLG00000017968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014444
71079243 - 71142353
63111
ENSAPLT00000038895
71079243 - 71142353
63111
ENSAPLT00000023210
71079243 - 71185185
105943
ENSAPLT00000017950
71079243 - 71156112
76870