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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71086286_71092053_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71086286 - 71092053
Intron Length:
5768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTAATTTAATA
Flanking Amino Acid:
WFEYEGTPLKWHYPIGLLFD
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84.3
0.77
0.7
77.4
36.6
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
67.4
0.54
1.5
77
33.7

Associated Gene:

Gene:
ATG5
Ensembl Gene ID:
ENSAPLG00000017968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038895
71079243 - 71142353
63111
ENSAPLT00000023210
71079243 - 71185185
105943
ENSAPLT00000017950
71079243 - 71156112
76870
ENSAPLT00000014444
71079243 - 71142353
63111