About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71130329_71155563_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71130329 - 71155563
Intron Length:
25235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
TTCTTTGAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTCTTTGAAT
Flanking Amino Acid:
DVCPSAITPEDGEKKTQIMI
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
74.8
0.62
1
67
39.8
Major PPT
69.6
0.44
1
71
38.8
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
78
0.96
1.3
92.24
29.8

Associated Gene:

Gene:
ATG5
Ensembl Gene ID:
ENSAPLG00000017968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017950
71079243 - 71156112
76870