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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7117025_7118236_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7117025 - 7118236
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGGGCATG
5'SS Class:
weak_major
3'SS Sequence:
GTTTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GTTTTCTTAACA
Flanking Amino Acid:
AGVVSLLLPGNEREAVQKKT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.1
53.4
45.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.5
0.71
0.9
77.5
35.6
Minor 5ss
37.4
-1.4
3.3
44.2
44.6
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025801
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046786
7116861 - 7118309
1449