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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71188880_71189086_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71188880 - 71189086
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AAATTGTTAATT
Flanking Amino Acid:
KTFGQLSNLKVHLRVHSGER
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.7
44.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80
0.67
0.7
73.7
31.4
Minor 5ss
39.7
-1.2
3.2
57.4
46.9
Minor BPS
55.6
0.25
2
71.94
39.1

Associated Gene:

Gene:
PRDM1
Ensembl Gene ID:
ENSAPLG00000013593
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022189
71187766 - 71285467
97702
ENSAPLT00000014161
71187766 - 71208668
20903
ENSAPLT00000044288
71187766 - 71239787
52022
ENSAPLT00000034484
71187766 - 71286194
98429