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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71190196_71197786_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71190196 - 71197786
Intron Length:
7591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
CTTATCTAAATA
Flanking Amino Acid:
SSRELTMMNLTQTHVNPKQH
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
86.3
0.82
0.7
84.1
23.9
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
56.6
0.2
1.7
66.99
40.2

Associated Gene:

Gene:
PRDM1
Ensembl Gene ID:
ENSAPLG00000013593
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022189
71187766 - 71285467
97702
ENSAPLT00000014161
71187766 - 71208668
20903
ENSAPLT00000044288
71187766 - 71239787
52022
ENSAPLT00000034484
71187766 - 71286194
98429