Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71201273_71208013_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71201273 - 71208013

Intron Length:

6741

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTGAC

U12 Branch Point Sequence:

ATGGACTGACCC

Flanking Amino Acid:

TFKYASNCKEVTGVISKEYI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

70.6

41.4

Major BPS

55.9

0.15

1.2

Major PPT

78.4

0.64

0.8

73.2

31.7

Minor 5ss

36.7

-1.5

3.3

50.2

46.4

Minor BPS

44.4

-0.4

1.9

54.49

43.2

Associated Gene:

Gene:

PRDM1

Ensembl Gene ID:

ENSAPLG00000013593

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034484

71187766 - 71286194

98429

ENSAPLT00000022189

71187766 - 71285467

97702

ENSAPLT00000014161

71187766 - 71208668

20903

ENSAPLT00000044288

71187766 - 71239787

52022