Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71208263_71208520_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

71208263 - 71208520

Intron Length:

258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGCAG

5'SS Class:

major

3'SS Sequence:

TCTTATTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

GTTTTCTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

62.9

43.2

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

88.2

0.86

0.7

80.5

36.7

Minor 5ss

29.5

-2.4

3.3

37.6

47.1

Minor BPS

69.9

0.7

1.5

84.13

Associated Gene:

Gene:

PRDM1

Ensembl Gene ID:

ENSAPLG00000013593

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014161

71187766 - 71208668

20903