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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71208263_71239589_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
71208263 - 71239589
Intron Length:
31327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
PRDM1
Ensembl Gene ID:
ENSAPLG00000013593
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044288
71187766 - 71239787
52022