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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71285327_71286069_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
71285327 - 71286069
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGAC
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TGTGCTGTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.5
37
Major BPS
65
0.37
1.3
75
40
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
22.7
-3.1
3.5
30.5
43.7
Minor BPS
46.2
-0.3
2.3
63.45
43

Associated Gene:

Gene:
PRDM1
Ensembl Gene ID:
ENSAPLG00000013593
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034484
71187766 - 71286194
98429